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Pull request #252 opened 11:56:07 Connecting to https://api.github.com using Jenkins ORNL Obtained ci/jenkins_config from 5a6083bd505a0d7d922ed6b9c90c022787600928+53a738c40e2bb6cfdf152bb2a09e30362e6db236 (ffabc3fd035b542e23125d0d10360592daab4a0d) [Pipeline] Start of Pipeline [Pipeline] withEnv [Pipeline] { [Pipeline] timeout Timeout set to expire in 6 hr 0 min [Pipeline] { [Pipeline] stage [Pipeline] { (Test) [Pipeline] parallel [Pipeline] { (Branch: CPU-on-device) [Pipeline] { (Branch: CPU) [Pipeline] { (Branch: CUDA) [Pipeline] stage [Pipeline] { (CPU-on-device) [Pipeline] stage [Pipeline] { (CPU) [Pipeline] stage [Pipeline] { (CUDA) [Pipeline] node [Pipeline] node [Pipeline] node Running on CpuNode6 in /var/jenkins/workspace/adamantine_PR-252 [Pipeline] { [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE using credential Jenkins ORNL Cloning the remote Git repository Cloning with configured refspecs honoured and without tags Cloning repository https://github.com/adamantine-sim/adamantine.git > git init /var/jenkins/workspace/adamantine_PR-252 # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine.git > git --version # timeout=10 > git --version # 'git version 2.17.1' using GIT_ASKPASS to set credentials > git fetch --no-tags --progress -- https://github.com/adamantine-sim/adamantine.git +refs/pull/252/head:refs/remotes/origin/PR-252 +refs/heads/master:refs/remotes/origin/master # timeout=10 Fetching without tags Merging remotes/origin/master commit 53a738c40e2bb6cfdf152bb2a09e30362e6db236 into PR head commit 5a6083bd505a0d7d922ed6b9c90c022787600928 Merge succeeded, producing 5a6083bd505a0d7d922ed6b9c90c022787600928 Checking out Revision 5a6083bd505a0d7d922ed6b9c90c022787600928 (PR-252) Commit message: "Use MPI groups to parallelize data assimilation" First time build. Skipping changelog. > git config remote.origin.url https://github.com/adamantine-sim/adamantine.git # timeout=10 > git config --add remote.origin.fetch +refs/pull/252/head:refs/remotes/origin/PR-252 # timeout=10 > git config --add remote.origin.fetch +refs/heads/master:refs/remotes/origin/master # timeout=10 > git config remote.origin.url https://github.com/adamantine-sim/adamantine.git # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine.git using GIT_ASKPASS to set credentials > git fetch --no-tags --progress -- https://github.com/adamantine-sim/adamantine.git +refs/pull/252/head:refs/remotes/origin/PR-252 +refs/heads/master:refs/remotes/origin/master # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 > git remote # timeout=10 > git config --get remote.origin.url # timeout=10 using GIT_ASKPASS to set credentials > git merge 53a738c40e2bb6cfdf152bb2a09e30362e6db236 # timeout=10 > git rev-parse HEAD^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker pull rombur/adamantine-stack:latest latest: Pulling from rombur/adamantine-stack 301a8b74f71f: Pulling fs layer 05aa224eaff3: Pulling fs layer 916b4224fdc9: Pulling fs layer 5f045bc9a36d: Pulling fs layer 3163984ffa1b: Pulling fs layer 35bcc02992bc: Pulling fs layer 98f651096b76: Pulling fs layer 92e7e128ab27: Pulling fs layer bf4efb9535b7: Pulling fs layer 1320df5918a8: Pulling fs layer 9b8434b5f181: Pulling fs layer ef41b69ae769: Pulling fs layer 074093919319: Pulling fs layer 288b93bf46a4: Pulling fs layer 52a48ade6b25: Pulling fs layer b04549f140a6: Pulling fs layer 927c52f93525: Pulling fs layer d591fd3b9620: Pulling fs layer d0e039e9b7a5: Pulling fs layer 4c2a113f9879: Pulling fs layer bbf095d4a584: Pulling fs layer 2789501be122: Pulling fs layer a7a7e4ebd277: Pulling fs layer 95c3261c2f75: Pulling fs layer 074093919319: Waiting 288b93bf46a4: Waiting 52a48ade6b25: Waiting b04549f140a6: Waiting 927c52f93525: Waiting d591fd3b9620: Waiting d0e039e9b7a5: Waiting 4c2a113f9879: Waiting bbf095d4a584: Waiting 2789501be122: Waiting a7a7e4ebd277: Waiting 95c3261c2f75: Waiting 98f651096b76: Waiting 92e7e128ab27: Waiting bf4efb9535b7: Waiting 1320df5918a8: Waiting 9b8434b5f181: Waiting ef41b69ae769: Waiting 5f045bc9a36d: Waiting 3163984ffa1b: Waiting 35bcc02992bc: Waiting 05aa224eaff3: Verifying Checksum 05aa224eaff3: Download complete 301a8b74f71f: Download complete 3163984ffa1b: Verifying Checksum 3163984ffa1b: Download complete 5f045bc9a36d: Verifying Checksum 5f045bc9a36d: Download complete 916b4224fdc9: Verifying Checksum 916b4224fdc9: Download complete 301a8b74f71f: Pull complete 05aa224eaff3: Pull complete 98f651096b76: Verifying Checksum 98f651096b76: Download complete bf4efb9535b7: Verifying Checksum bf4efb9535b7: Download complete 916b4224fdc9: Pull complete 5f045bc9a36d: Pull complete 3163984ffa1b: Pull complete 1320df5918a8: Verifying Checksum 1320df5918a8: Download complete 9b8434b5f181: Verifying Checksum 9b8434b5f181: Download complete ef41b69ae769: Download complete Still waiting to schedule task Waiting for next available executor on ‘docker’ Still waiting to schedule task Waiting for next available executor on ‘nvidia-docker&&volta’ 074093919319: Verifying Checksum 074093919319: Download complete 288b93bf46a4: Download complete 35bcc02992bc: Verifying Checksum 35bcc02992bc: Download complete 52a48ade6b25: Download complete b04549f140a6: Verifying Checksum b04549f140a6: Download complete 927c52f93525: Verifying Checksum 927c52f93525: Download complete d591fd3b9620: Verifying Checksum d591fd3b9620: Download complete 4c2a113f9879: Verifying Checksum 4c2a113f9879: Download complete d0e039e9b7a5: Verifying Checksum d0e039e9b7a5: Download complete bbf095d4a584: Download complete 2789501be122: Verifying Checksum 2789501be122: Download complete 95c3261c2f75: Verifying Checksum 95c3261c2f75: Download complete 92e7e128ab27: Verifying Checksum 92e7e128ab27: Download complete a7a7e4ebd277: Verifying Checksum a7a7e4ebd277: Download complete 35bcc02992bc: Pull complete 98f651096b76: Pull complete 92e7e128ab27: Pull complete bf4efb9535b7: Pull complete 1320df5918a8: Pull complete 9b8434b5f181: Pull complete ef41b69ae769: Pull complete 074093919319: Pull complete 288b93bf46a4: Pull complete 52a48ade6b25: Pull complete b04549f140a6: Pull complete 927c52f93525: Pull complete d591fd3b9620: Pull complete d0e039e9b7a5: Pull complete 4c2a113f9879: Pull complete bbf095d4a584: Pull complete 2789501be122: Pull complete a7a7e4ebd277: Pull complete 95c3261c2f75: Pull complete Digest: sha256:73d1047f633d1d71caa64b01203f89188b511871872b35af176d0cc2dd4aedc3 Status: Downloaded newer image for rombur/adamantine-stack:latest docker.io/rombur/adamantine-stack:latest [Pipeline] } [Pipeline] // withEnv [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker inspect -f . rombur/adamantine-stack:latest . [Pipeline] } [Pipeline] // withEnv [Pipeline] withDockerContainer CpuNode6 seems to be running inside container 000334f31f8629b8eaeb6326227b7cf88da75374aa5f2bd4a8e8ac57be811226 $ docker run -t -d -u 0:0 -w /var/jenkins/workspace/adamantine_PR-252 --volumes-from 000334f31f8629b8eaeb6326227b7cf88da75374aa5f2bd4a8e8ac57be811226 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** rombur/adamantine-stack:latest cat $ docker top a16fcda11bf388c6c4c5e271f20ec8c3c918560f171acaa9aeee2dea49260fbc -eo pid,comm [Pipeline] { [Pipeline] sh + rm -rf build + mkdir -p build [Pipeline] dir Running in /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] { [Pipeline] sh -- Using the deal.II-9.5.0-pre installation found at /opt/dealii -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_add_test.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_query_git_information.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_setup_target.cmake -- The CXX compiler identification is GNU 11.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /opt/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /opt/boost/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found suitable version "1.80.0", minimum required is "1.70.0") found components: chrono program_options timer unit_test_framework -- Build type: Release -- Configuring done -- Generating done -- Build files have been written to: /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] sh + make -j4 [ 1%] Copying demo_316_short.info [ 1%] Building CXX object source/CMakeFiles/Adamantine.dir/BodyForce.cc.o [ 2%] Copying amr_test.info [ 2%] Copying demo_316_short_anisotropic.info [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_amr_test.info [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short.info [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_anisotropic.info [ 3%] Copying demo_316_short_scan_path.txt [ 4%] Copying experimental_data_0_0.csv [ 5%] Copying extruded_cube.msh [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_scan_path.txt [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experimental_data_0_0.csv [ 6%] Copying integration_2d.info [ 6%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_extruded_cube.msh [ 7%] Copying integration_2d_ensemble.info [ 7%] Copying integration_2d_gold.txt [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d.info [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_ensemble.info [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_gold.txt [ 8%] Copying integration_3d_gold.txt [ 9%] Copying integration_3d_gold_1.txt [ 10%] Copying integration_3d_gold_0.txt [ 10%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold.txt [ 11%] Building CXX object source/CMakeFiles/Adamantine.dir/CubeHeatSource.cc.o [ 11%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_1.txt [ 11%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_0.txt [ 12%] Building CXX object source/CMakeFiles/Adamantine.dir/DataAssimilator.cc.o [ 13%] Copying material_deposition_2d.txt [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_2d.txt [ 14%] Copying material_deposition_3d.txt [ 14%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_3d.txt [ 15%] Copying material_path_test_material_deposition.txt [ 15%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_path_test_material_deposition.txt [ 16%] Copying raytracing_experimental_data_0_0.csv [ 16%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_raytracing_experimental_data_0_0.csv [ 17%] Copying scan_path.txt [ 17%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path.txt [ 18%] Copying scan_path_diagonal.txt [ 18%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_diagonal.txt [ 19%] Copying scan_path_event_series.inp [ 19%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_event_series.inp [ 20%] Copying scan_path_test_thermal_physics.txt [ 20%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_test_thermal_physics.txt [ 20%] Copying scan_path_L.txt [ 20%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_L.txt [ 21%] Copying scan_path_layers.txt [ 21%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_layers.txt [ 21%] Copying bare_plate_L_ensemble.info [ 21%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_ensemble.info [ 22%] Copying bare_plate_L_da.info [ 22%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da.info [ 23%] Copying bare_plate_L_scan_path.txt [ 23%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path.txt [ 24%] Copying bare_plate_L_scan_path_fast.txt [ 24%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path_fast.txt [ 25%] Copying bare_plate_L_expt_log.txt [ 25%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_log.txt [ 26%] Copying bare_plate_L_expt_data_0_0.csv [ 26%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_0.csv [ 27%] Copying bare_plate_L_expt_data_0_1.csv [ 27%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_1.csv [ 28%] Copying experiment_log_test.txt [ 28%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experiment_log_test.txt [ 29%] Copying bare_plate_L_da_aug_ref_log.txt [ 29%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_log.txt [ 30%] Copying bare_plate_L_da_aug_ref_data_0_0.csv [ 30%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_0.csv [ 31%] Copying bare_plate_L_da_aug_ref_data_0_1.csv [ 31%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_1.csv [ 32%] Copying bare_plate_L_da_augmented.info [ 32%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_augmented.info [ 33%] Copying thermoelastic_bare_plate.info [ 33%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate.info [ 33%] Copying thermoelastic_bare_plate_scan_path.txt [ 33%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_scan_path.txt [ 34%] Copying rays_cam-0-0_test_full.csv [ 34%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_rays_cam-0-0_test_full.csv [ 35%] Building CXX object source/CMakeFiles/Adamantine.dir/ElectronBeamHeatSource.cc.o [ 36%] Building CXX object source/CMakeFiles/Adamantine.dir/Geometry.cc.o [ 37%] Building CXX object source/CMakeFiles/Adamantine.dir/GoldakHeatSource.cc.o [ 38%] Building CXX object source/CMakeFiles/Adamantine.dir/ImplicitOperator.cc.o [ 38%] Building CXX object source/CMakeFiles/Adamantine.dir/MaterialProperty.cc.o [ 39%] Copying thermoelastic_bare_plate_add_material_scan_path.txt [ 39%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_add_material_scan_path.txt [ 40%] Copying integration_da_add_material.info [ 40%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material.info [ 41%] Copying integration_da_add_material_expt_log.txt [ 41%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_log.txt [ 42%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalOperator.cc.o [ 43%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalPhysics.cc.o [ 44%] Building CXX object source/CMakeFiles/Adamantine.dir/NewtonSolver.cc.o [ 45%] Copying integration_da_add_material_expt_pc_0_0.csv [ 45%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_pc_0_0.csv [ 46%] Building CXX object source/CMakeFiles/Adamantine.dir/PointCloud.cc.o [ 47%] Building CXX object source/CMakeFiles/Adamantine.dir/PostProcessor.cc.o [ 48%] Building CXX object source/CMakeFiles/Adamantine.dir/RayTracing.cc.o [ 48%] Building CXX object source/CMakeFiles/Adamantine.dir/ScanPath.cc.o [ 49%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperator.cc.o [ 50%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysics.cc.o [ 51%] Building CXX object source/CMakeFiles/Adamantine.dir/Timer.cc.o [ 52%] Building CXX object source/CMakeFiles/Adamantine.dir/ensemble_management.cc.o [ 53%] Building CXX object source/CMakeFiles/Adamantine.dir/experimental_data_utils.cc.o [ 54%] Building CXX object source/CMakeFiles/Adamantine.dir/material_deposition.cc.o [ 54%] Building CXX object source/CMakeFiles/Adamantine.dir/validate_input_database.cc.o [ 55%] Copying integration_da_add_material_sp.txt [ 55%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_sp.txt [ 55%] Copying integration_da_add_material_expt_ray_0_0.csv [ 55%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_ray_0_0.csv [ 56%] Linking CXX static library libAdamantine.a [ 56%] Built target Adamantine [ 57%] Building CXX object tests/CMakeFiles/test_geometry.dir/test_geometry.cc.o [ 58%] Building CXX object application/CMakeFiles/adamantine.dir/adamantine.cc.o [ 60%] Building CXX object tests/CMakeFiles/test_heat_source.dir/test_heat_source.cc.o [ 59%] Building CXX object tests/CMakeFiles/test_data_assimilator.dir/test_data_assimilator.cc.o [ 61%] Linking CXX executable ../bin/test_heat_source [ 61%] Built target test_heat_source [ 62%] Building CXX object tests/CMakeFiles/test_implicit_operator.dir/test_implicit_operator.cc.o [ 63%] Linking CXX executable ../bin/test_geometry [ 63%] Built target test_geometry [ 64%] Building CXX object tests/CMakeFiles/test_integration_thermoelastic.dir/test_integration_thermoelastic.cc.o [ 65%] Linking CXX executable ../bin/test_data_assimilator [ 65%] Built target test_data_assimilator [ 65%] Building CXX object tests/CMakeFiles/test_material_property.dir/test_material_property.cc.o [ 65%] Linking CXX executable ../bin/test_implicit_operator [ 65%] Built target test_implicit_operator [ 66%] Building CXX object tests/CMakeFiles/test_mechanical_operator.dir/test_mechanical_operator.cc.o [ 67%] Linking CXX executable ../bin/test_material_property [ 67%] Built target test_material_property [ 68%] Building CXX object tests/CMakeFiles/test_mechanical_physics.dir/test_mechanical_physics.cc.o [ 69%] Linking CXX executable ../bin/test_integration_thermoelastic [ 70%] Linking CXX executable ../bin/test_mechanical_operator [ 70%] Built target test_mechanical_operator [ 71%] Building CXX object tests/CMakeFiles/test_newton_solver.dir/test_newton_solver.cc.o [ 71%] Built target test_integration_thermoelastic [ 72%] Building CXX object tests/CMakeFiles/test_post_processor.dir/test_post_processor.cc.o [ 73%] Linking CXX executable ../bin/adamantine [ 73%] Linking CXX executable ../bin/test_newton_solver [ 73%] Built target test_newton_solver [ 74%] Building CXX object tests/CMakeFiles/test_scan_path.dir/test_scan_path.cc.o [ 74%] Built target adamantine [ 75%] Building CXX object tests/CMakeFiles/test_thermal_operator.dir/test_thermal_operator.cc.o [ 76%] Linking CXX executable ../bin/test_scan_path [ 76%] Built target test_scan_path [ 77%] Building CXX object tests/CMakeFiles/test_timer.dir/test_timer.cc.o [ 78%] Linking CXX executable ../bin/test_timer [ 78%] Built target test_timer [ 79%] Building CXX object tests/CMakeFiles/test_utils.dir/test_utils.cc.o [ 80%] Linking CXX executable ../bin/test_post_processor [ 80%] Built target test_post_processor [ 81%] Building CXX object tests/CMakeFiles/test_integration_3d_amr.dir/test_integration_3d_amr.cc.o [ 82%] Linking CXX executable ../bin/test_utils [ 82%] Built target test_utils [ 83%] Building CXX object tests/CMakeFiles/test_validate_input_database.dir/test_validate_input_database.cc.o [ 84%] Linking CXX executable ../bin/test_mechanical_physics [ 84%] Built target test_mechanical_physics [ 84%] Building CXX object tests/CMakeFiles/test_experimental_data.dir/test_experimental_data.cc.o [ 85%] Linking CXX executable ../bin/test_thermal_operator [ 85%] Built target test_thermal_operator [ 86%] Building CXX object tests/CMakeFiles/test_integration_2d.dir/test_integration_2d.cc.o [ 87%] Linking CXX executable ../bin/test_validate_input_database [ 87%] Built target test_validate_input_database [ 88%] Building CXX object tests/CMakeFiles/test_integration_3d.dir/test_integration_3d.cc.o [ 89%] Linking CXX executable ../bin/test_experimental_data [ 89%] Built target test_experimental_data [ 90%] Building CXX object tests/CMakeFiles/test_integration_da.dir/test_integration_da.cc.o [ 91%] Linking CXX executable ../bin/test_integration_3d_amr [ 91%] Built target test_integration_3d_amr [ 92%] Building CXX object tests/CMakeFiles/test_integration_da_augmented.dir/test_integration_da_augmented.cc.o [ 93%] Linking CXX executable ../bin/test_integration_3d [ 93%] Built target test_integration_3d [ 94%] Building CXX object tests/CMakeFiles/test_material_deposition.dir/test_material_deposition.cc.o [ 95%] Linking CXX executable ../bin/test_integration_2d [ 95%] Built target test_integration_2d [ 95%] Building CXX object tests/CMakeFiles/test_thermal_physics.dir/test_thermal_physics.cc.o [ 95%] Linking CXX executable ../bin/test_integration_da [ 96%] Linking CXX executable ../bin/test_integration_da_augmented [ 96%] Built target test_integration_da [ 97%] Building CXX object tests/CMakeFiles/test_ensemble_management.dir/test_ensemble_management.cc.o [ 97%] Built target test_integration_da_augmented [ 98%] Linking CXX executable ../bin/test_material_deposition [ 98%] Built target test_material_deposition [ 99%] Linking CXX executable ../bin/test_thermal_physics [ 99%] Built target test_thermal_physics [100%] Linking CXX executable ../bin/test_ensemble_management [100%] Built target test_ensemble_management [Pipeline] sh + ctest --no-compress-output -R test_ -T Test Site: a16fcda11bf3 Build name: Linux-c++ Create new tag: 20231222-1701 - Experimental Test project /var/jenkins/workspace/adamantine_PR-252/build Start 2: test_data_assimilator_1 1/32 Test #2: test_data_assimilator_1 ............ Passed 0.84 sec Start 3: test_geometry_1 2/32 Test #3: test_geometry_1 .................... Passed 0.19 sec Start 4: test_heat_source_1 3/32 Test #4: test_heat_source_1 ................. Passed 0.16 sec Start 5: test_implicit_operator_1 4/32 Test #5: test_implicit_operator_1 ........... Passed 0.20 sec Start 6: test_integration_thermoelastic_1 5/32 Test #6: test_integration_thermoelastic_1 ... Passed 4.13 sec Start 7: test_material_property_1 6/32 Test #7: test_material_property_1 ........... Passed 0.17 sec Start 8: test_mechanical_operator_1 7/32 Test #8: test_mechanical_operator_1 ......... Passed 0.69 sec Start 9: test_mechanical_physics_1 8/32 Test #9: test_mechanical_physics_1 .......... Passed 1.43 sec Start 10: test_newton_solver_1 9/32 Test #10: test_newton_solver_1 ............... Passed 0.12 sec Start 11: test_post_processor_1 10/32 Test #11: test_post_processor_1 .............. Passed 0.21 sec Start 12: test_scan_path_1 11/32 Test #12: test_scan_path_1 ................... Passed 0.16 sec Start 13: test_thermal_operator_1 12/32 Test #13: test_thermal_operator_1 ............ Passed 0.30 sec Start 14: test_timer_1 13/32 Test #14: test_timer_1 ....................... Passed 0.76 sec Start 15: test_utils_1 14/32 Test #15: test_utils_1 ....................... Passed 0.12 sec Start 16: test_integration_3d_amr_1 15/32 Test #16: test_integration_3d_amr_1 .......... Passed 0.41 sec Start 17: test_validate_input_database_1 16/32 Test #17: test_validate_input_database_1 ..... Passed 0.17 sec Start 18: test_experimental_data_1 17/32 Test #18: test_experimental_data_1 ........... Passed 1.02 sec Start 19: test_experimental_data_2 18/32 Test #19: test_experimental_data_2 ........... Passed 0.19 sec Start 20: test_integration_2d_1 19/32 Test #20: test_integration_2d_1 .............. Passed 0.62 sec Start 21: test_integration_2d_2 20/32 Test #21: test_integration_2d_2 .............. Passed 0.48 sec Start 22: test_integration_3d_1 21/32 Test #22: test_integration_3d_1 .............. Passed 2.88 sec Start 23: test_integration_3d_2 22/32 Test #23: test_integration_3d_2 .............. Passed 1.70 sec Start 24: test_integration_da_1 23/32 Test #24: test_integration_da_1 .............. Passed 8.74 sec Start 25: test_integration_da_2 24/32 Test #25: test_integration_da_2 .............. Passed 8.04 sec Start 26: test_integration_da_augmented_1 25/32 Test #26: test_integration_da_augmented_1 .... Passed 1.99 sec Start 27: test_integration_da_augmented_2 26/32 Test #27: test_integration_da_augmented_2 .... Passed 1.71 sec Start 28: test_material_deposition_1 27/32 Test #28: test_material_deposition_1 ......... Passed 0.77 sec Start 29: test_material_deposition_2 28/32 Test #29: test_material_deposition_2 ......... Passed 0.60 sec Start 30: test_thermal_physics_1 29/32 Test #30: test_thermal_physics_1 ............. Passed 0.89 sec Start 31: test_thermal_physics_2 30/32 Test #31: test_thermal_physics_2 ............. Passed 0.72 sec Start 32: test_ensemble_management_1 31/32 Test #32: test_ensemble_management_1 ......... Passed 0.11 sec Start 33: test_ensemble_management_2 32/32 Test #33: test_ensemble_management_2 ......... Passed 0.15 sec 100% tests passed, 0 tests failed out of 32 Total Test time (real) = 40.69 sec [Pipeline] } [Pipeline] // dir Post stage [Pipeline] xunit INFO: Processing CTest-Version 3.x (default) [Pipeline] } $ docker stop --time=1 a16fcda11bf388c6c4c5e271f20ec8c3c918560f171acaa9aeee2dea49260fbc INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/adamantine_PR-252' for the testing framework 'CTest-Version 3.x (default)'. $ docker rm -f --volumes a16fcda11bf388c6c4c5e271f20ec8c3c918560f171acaa9aeee2dea49260fbc [Pipeline] // withDockerContainer [Pipeline] } [Pipeline] // withEnv [Pipeline] } Running on CpuNode6 in /var/jenkins/workspace/adamantine_PR-252 [Pipeline] // node [Pipeline] } [Pipeline] { [Pipeline] // stage [Pipeline] } [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE using credential Jenkins ORNL Fetching changes from the remote Git repository Fetching without tags Merging remotes/origin/master commit 53a738c40e2bb6cfdf152bb2a09e30362e6db236 into PR head commit 5a6083bd505a0d7d922ed6b9c90c022787600928 Merge succeeded, producing 5a6083bd505a0d7d922ed6b9c90c022787600928 Checking out Revision 5a6083bd505a0d7d922ed6b9c90c022787600928 (PR-252) Commit message: "Use MPI groups to parallelize data assimilation" > git rev-parse --resolve-git-dir /var/jenkins/workspace/adamantine_PR-252/.git # timeout=10 > git config remote.origin.url https://github.com/adamantine-sim/adamantine.git # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine.git > git --version # timeout=10 > git --version # 'git version 2.17.1' using GIT_ASKPASS to set credentials > git fetch --no-tags --progress -- https://github.com/adamantine-sim/adamantine.git +refs/pull/252/head:refs/remotes/origin/PR-252 +refs/heads/master:refs/remotes/origin/master # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 > git remote # timeout=10 > git config --get remote.origin.url # timeout=10 using GIT_ASKPASS to set credentials > git merge 53a738c40e2bb6cfdf152bb2a09e30362e6db236 # timeout=10 > git rev-parse HEAD^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker pull rombur/adamantine-stack:no_gpu-latest no_gpu-latest: Pulling from rombur/adamantine-stack Digest: sha256:8e2b1014dc4112cf7e1d6ba1c44601bfc036fc0c743a5a5ff0d64e43d757f4f1 Status: Image is up to date for rombur/adamantine-stack:no_gpu-latest docker.io/rombur/adamantine-stack:no_gpu-latest [Pipeline] } [Pipeline] // withEnv [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker inspect -f . rombur/adamantine-stack:no_gpu-latest . [Pipeline] } [Pipeline] // withEnv [Pipeline] withDockerContainer CpuNode6 seems to be running inside container 000334f31f8629b8eaeb6326227b7cf88da75374aa5f2bd4a8e8ac57be811226 $ docker run -t -d -u 0:0 -w /var/jenkins/workspace/adamantine_PR-252 --volumes-from 000334f31f8629b8eaeb6326227b7cf88da75374aa5f2bd4a8e8ac57be811226 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** rombur/adamantine-stack:no_gpu-latest cat $ docker top d63464297d7361a68995081ba4ebc49a5af0ec7c740aa8d3ea03308b2a5d8a93 -eo pid,comm [Pipeline] { [Pipeline] sh + rm -rf build + mkdir -p build [Pipeline] dir Running in /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] { [Pipeline] sh -- Using the deal.II-9.5.0-pre installation found at /opt/dealii -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_add_test.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_query_git_information.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_setup_target.cmake -- The CXX compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /opt/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /opt/boost/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found suitable version "1.80.0", minimum required is "1.70.0") found components: chrono program_options timer unit_test_framework -- Build type: Debug -- Configuring done -- Generating done -- Build files have been written to: /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] sh + make -j4 [ 1%] Copying amr_test.info [ 2%] Copying demo_316_short.info [ 2%] Copying demo_316_short_anisotropic.info [ 2%] Building CXX object source/CMakeFiles/Adamantine.dir/BodyForce.cc.o [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short.info [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_amr_test.info [ 2%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_anisotropic.info [ 3%] Copying demo_316_short_scan_path.txt [ 4%] Copying experimental_data_0_0.csv [ 5%] Copying extruded_cube.msh [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_scan_path.txt [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experimental_data_0_0.csv [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_extruded_cube.msh [ 6%] Copying integration_2d.info [ 7%] Copying integration_2d_ensemble.info [ 7%] Copying integration_2d_gold.txt [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d.info [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_gold.txt [ 7%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_ensemble.info [ 8%] Copying integration_3d_gold.txt [ 9%] Copying integration_3d_gold_0.txt [ 10%] Copying integration_3d_gold_1.txt [ 10%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold.txt [ 10%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_0.txt [ 11%] Building CXX object source/CMakeFiles/Adamantine.dir/CubeHeatSource.cc.o [ 11%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_1.txt [ 12%] Copying material_deposition_2d.txt [ 13%] Copying material_deposition_3d.txt [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_2d.txt [ 14%] Copying material_path_test_material_deposition.txt [ 14%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_3d.txt [ 15%] Copying raytracing_experimental_data_0_0.csv [ 15%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_path_test_material_deposition.txt [ 16%] Copying scan_path.txt [ 16%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_raytracing_experimental_data_0_0.csv [ 16%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path.txt [ 17%] Copying scan_path_diagonal.txt [ 18%] Copying scan_path_event_series.inp [ 18%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_diagonal.txt [ 19%] Copying scan_path_test_thermal_physics.txt [ 19%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_event_series.inp [ 19%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_test_thermal_physics.txt [ 19%] Copying scan_path_L.txt [ 20%] Copying scan_path_layers.txt [ 20%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_L.txt [ 20%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_layers.txt [ 20%] Copying bare_plate_L_ensemble.info [ 21%] Copying bare_plate_L_da.info [ 21%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_ensemble.info [ 21%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da.info [ 22%] Copying bare_plate_L_scan_path.txt [ 23%] Copying bare_plate_L_scan_path_fast.txt [ 23%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path.txt [ 23%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path_fast.txt [ 24%] Copying bare_plate_L_expt_log.txt [ 25%] Copying bare_plate_L_expt_data_0_0.csv [ 25%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_log.txt [ 25%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_0.csv [ 26%] Copying experiment_log_test.txt [ 27%] Copying bare_plate_L_expt_data_0_1.csv [ 27%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experiment_log_test.txt [ 27%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_1.csv [ 28%] Copying bare_plate_L_da_aug_ref_log.txt [ 29%] Copying bare_plate_L_da_aug_ref_data_0_0.csv [ 29%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_log.txt [ 29%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_0.csv [ 30%] Copying bare_plate_L_da_aug_ref_data_0_1.csv [ 31%] Copying bare_plate_L_da_augmented.info [ 31%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_1.csv [ 31%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_augmented.info [ 32%] Copying thermoelastic_bare_plate.info [ 32%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate.info [ 32%] Copying thermoelastic_bare_plate_scan_path.txt [ 33%] Building CXX object source/CMakeFiles/Adamantine.dir/DataAssimilator.cc.o [ 33%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_scan_path.txt [ 34%] Copying rays_cam-0-0_test_full.csv [ 34%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_rays_cam-0-0_test_full.csv [ 35%] Copying thermoelastic_bare_plate_add_material_scan_path.txt [ 35%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_add_material_scan_path.txt [ 36%] Copying integration_da_add_material.info [ 36%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material.info [ 37%] Copying integration_da_add_material_expt_log.txt [ 37%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_log.txt [ 38%] Copying integration_da_add_material_expt_pc_0_0.csv [ 38%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_pc_0_0.csv [ 39%] Copying integration_da_add_material_sp.txt [ 39%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_sp.txt [ 39%] Copying integration_da_add_material_expt_ray_0_0.csv [ 39%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_ray_0_0.csv [ 40%] Building CXX object source/CMakeFiles/Adamantine.dir/ElectronBeamHeatSource.cc.o [ 41%] Building CXX object source/CMakeFiles/Adamantine.dir/Geometry.cc.o [ 42%] Building CXX object source/CMakeFiles/Adamantine.dir/GoldakHeatSource.cc.o [ 43%] Building CXX object source/CMakeFiles/Adamantine.dir/ImplicitOperator.cc.o [ 43%] Building CXX object source/CMakeFiles/Adamantine.dir/MaterialProperty.cc.o [ 44%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalOperator.cc.o [ 45%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalPhysics.cc.o [ 46%] Building CXX object source/CMakeFiles/Adamantine.dir/NewtonSolver.cc.o [ 47%] Building CXX object source/CMakeFiles/Adamantine.dir/PointCloud.cc.o [ 48%] Building CXX object source/CMakeFiles/Adamantine.dir/PostProcessor.cc.o [ 49%] Building CXX object source/CMakeFiles/Adamantine.dir/RayTracing.cc.o [ 49%] Building CXX object source/CMakeFiles/Adamantine.dir/ScanPath.cc.o [ 50%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperator.cc.o [ 51%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysics.cc.o [ 52%] Building CXX object source/CMakeFiles/Adamantine.dir/Timer.cc.o [ 53%] Building CXX object source/CMakeFiles/Adamantine.dir/ensemble_management.cc.o [ 54%] Building CXX object source/CMakeFiles/Adamantine.dir/experimental_data_utils.cc.o [ 55%] Building CXX object source/CMakeFiles/Adamantine.dir/material_deposition.cc.o [ 55%] Building CXX object source/CMakeFiles/Adamantine.dir/validate_input_database.cc.o [ 56%] Linking CXX static library libAdamantine.a [ 56%] Built target Adamantine [ 57%] Building CXX object tests/CMakeFiles/test_heat_source.dir/test_heat_source.cc.o [ 58%] Building CXX object application/CMakeFiles/adamantine.dir/adamantine.cc.o [ 60%] Building CXX object tests/CMakeFiles/test_data_assimilator.dir/test_data_assimilator.cc.o [ 60%] Building CXX object tests/CMakeFiles/test_geometry.dir/test_geometry.cc.o [ 61%] Linking CXX executable ../bin/test_heat_source [ 61%] Built target test_heat_source [ 62%] Building CXX object tests/CMakeFiles/test_implicit_operator.dir/test_implicit_operator.cc.o [ 63%] Linking CXX executable ../bin/test_geometry [ 63%] Built target test_geometry [ 64%] Building CXX object tests/CMakeFiles/test_integration_thermoelastic.dir/test_integration_thermoelastic.cc.o [ 65%] Linking CXX executable ../bin/test_data_assimilator [ 65%] Built target test_data_assimilator [ 65%] Building CXX object tests/CMakeFiles/test_material_property.dir/test_material_property.cc.o [ 65%] Linking CXX executable ../bin/test_implicit_operator [ 66%] Linking CXX executable ../bin/adamantine [ 67%] Linking CXX executable ../bin/test_material_property [ 67%] Built target test_implicit_operator [ 68%] Building CXX object tests/CMakeFiles/test_mechanical_operator.dir/test_mechanical_operator.cc.o [ 68%] Built target test_material_property [ 69%] Building CXX object tests/CMakeFiles/test_mechanical_physics.dir/test_mechanical_physics.cc.o [ 69%] Built target adamantine [ 70%] Building CXX object tests/CMakeFiles/test_newton_solver.dir/test_newton_solver.cc.o [ 71%] Linking CXX executable ../bin/test_integration_thermoelastic [ 71%] Linking CXX executable ../bin/test_newton_solver [ 71%] Built target test_newton_solver [ 72%] Building CXX object tests/CMakeFiles/test_post_processor.dir/test_post_processor.cc.o [ 72%] Built target test_integration_thermoelastic [ 73%] Building CXX object tests/CMakeFiles/test_scan_path.dir/test_scan_path.cc.o [ 74%] Linking CXX executable ../bin/test_mechanical_operator [ 75%] Linking CXX executable ../bin/test_scan_path [ 75%] Built target test_mechanical_operator [ 76%] Building CXX object tests/CMakeFiles/test_thermal_operator.dir/test_thermal_operator.cc.o [ 77%] Linking CXX executable ../bin/test_mechanical_physics [ 77%] Built target test_scan_path [ 78%] Building CXX object tests/CMakeFiles/test_timer.dir/test_timer.cc.o [ 78%] Built target test_mechanical_physics [ 79%] Building CXX object tests/CMakeFiles/test_utils.dir/test_utils.cc.o [ 80%] Linking CXX executable ../bin/test_timer [ 81%] Linking CXX executable ../bin/test_utils [ 81%] Built target test_timer [ 82%] Building CXX object tests/CMakeFiles/test_integration_3d_amr.dir/test_integration_3d_amr.cc.o [ 82%] Built target test_utils [ 83%] Building CXX object tests/CMakeFiles/test_validate_input_database.dir/test_validate_input_database.cc.o [ 84%] Linking CXX executable ../bin/test_post_processor [ 84%] Built target test_post_processor [ 84%] Building CXX object tests/CMakeFiles/test_experimental_data.dir/test_experimental_data.cc.o [ 85%] Linking CXX executable ../bin/test_validate_input_database [ 85%] Built target test_validate_input_database [ 86%] Building CXX object tests/CMakeFiles/test_integration_2d.dir/test_integration_2d.cc.o [ 87%] Linking CXX executable ../bin/test_thermal_operator [ 87%] Built target test_thermal_operator [ 88%] Building CXX object tests/CMakeFiles/test_integration_3d.dir/test_integration_3d.cc.o [ 89%] Linking CXX executable ../bin/test_experimental_data [ 89%] Built target test_experimental_data [ 90%] Building CXX object tests/CMakeFiles/test_integration_da.dir/test_integration_da.cc.o [ 91%] Linking CXX executable ../bin/test_integration_3d_amr [ 91%] Built target test_integration_3d_amr [ 92%] Building CXX object tests/CMakeFiles/test_integration_da_augmented.dir/test_integration_da_augmented.cc.o [ 93%] Linking CXX executable ../bin/test_integration_2d [ 94%] Linking CXX executable ../bin/test_integration_3d [ 94%] Built target test_integration_2d [ 95%] Building CXX object tests/CMakeFiles/test_material_deposition.dir/test_material_deposition.cc.o [ 95%] Built target test_integration_3d [ 95%] Building CXX object tests/CMakeFiles/test_thermal_physics.dir/test_thermal_physics.cc.o [ 95%] Linking CXX executable ../bin/test_integration_da [ 95%] Built target test_integration_da [ 96%] Building CXX object tests/CMakeFiles/test_ensemble_management.dir/test_ensemble_management.cc.o [ 97%] Linking CXX executable ../bin/test_material_deposition [ 98%] Linking CXX executable ../bin/test_thermal_physics [ 98%] Built target test_material_deposition [ 99%] Linking CXX executable ../bin/test_integration_da_augmented [100%] Linking CXX executable ../bin/test_ensemble_management [100%] Built target test_thermal_physics [100%] Built target test_ensemble_management [100%] Built target test_integration_da_augmented [Pipeline] sh + ctest --no-compress-output -R test_ -T Test Site: d63464297d73 Build name: Linux-c++ Create new tag: 20231222-1704 - Experimental Test project /var/jenkins/workspace/adamantine_PR-252/build Start 2: test_data_assimilator_1 1/32 Test #2: test_data_assimilator_1 ............ Passed 1.13 sec Start 3: test_geometry_1 2/32 Test #3: test_geometry_1 .................... Passed 0.38 sec Start 4: test_heat_source_1 3/32 Test #4: test_heat_source_1 ................. Passed 0.19 sec Start 5: test_implicit_operator_1 4/32 Test #5: test_implicit_operator_1 ........... Passed 0.25 sec Start 6: test_integration_thermoelastic_1 5/32 Test #6: test_integration_thermoelastic_1 ... Passed 434.36 sec Start 7: test_material_property_1 6/32 Test #7: test_material_property_1 ........... Passed 0.20 sec Start 8: test_mechanical_operator_1 7/32 Test #8: test_mechanical_operator_1 ......... Passed 16.10 sec Start 9: test_mechanical_physics_1 8/32 Test #9: test_mechanical_physics_1 .......... Passed 45.52 sec Start 10: test_newton_solver_1 9/32 Test #10: test_newton_solver_1 ............... Passed 0.13 sec Start 11: test_post_processor_1 10/32 Test #11: test_post_processor_1 .............. Passed 3.46 sec Start 12: test_scan_path_1 11/32 Test #12: test_scan_path_1 ................... Passed 0.13 sec Start 13: test_thermal_operator_1 12/32 Test #13: test_thermal_operator_1 ............ Passed 3.18 sec Start 14: test_timer_1 13/32 Test #14: test_timer_1 ....................... Passed 0.77 sec Start 15: test_utils_1 14/32 Test #15: test_utils_1 ....................... Passed 0.13 sec Start 16: test_integration_3d_amr_1 15/32 Test #16: test_integration_3d_amr_1 .......... Passed 13.40 sec Start 17: test_validate_input_database_1 16/32 Test #17: test_validate_input_database_1 ..... Passed 0.18 sec Start 18: test_experimental_data_1 17/32 Test #18: test_experimental_data_1 ........... Passed 8.57 sec Start 19: test_experimental_data_2 18/32 Test #19: test_experimental_data_2 ........... Passed 0.19 sec Start 20: test_integration_2d_1 19/32 Test #20: test_integration_2d_1 .............. Passed 10.00 sec Start 21: test_integration_2d_2 20/32 Test #21: test_integration_2d_2 .............. Passed 6.46 sec Start 22: test_integration_3d_1 21/32 Test #22: test_integration_3d_1 .............. Passed 158.41 sec Start 23: test_integration_3d_2 22/32 Test #23: test_integration_3d_2 .............. Passed 86.56 sec Start 24: test_integration_da_1 23/32 Test #24: test_integration_da_1 .............. Passed 230.49 sec Start 25: test_integration_da_2 24/32 Test #25: test_integration_da_2 .............. Passed 203.06 sec Start 26: test_integration_da_augmented_1 25/32 Test #26: test_integration_da_augmented_1 .... Passed 52.90 sec Start 27: test_integration_da_augmented_2 26/32 Test #27: test_integration_da_augmented_2 .... Passed 39.29 sec Start 28: test_material_deposition_1 27/32 Test #28: test_material_deposition_1 ......... Passed 19.00 sec Start 29: test_material_deposition_2 28/32 Test #29: test_material_deposition_2 ......... Passed 13.00 sec Start 30: test_thermal_physics_1 29/32 Test #30: test_thermal_physics_1 ............. Passed 44.46 sec Start 31: test_thermal_physics_2 30/32 Test #31: test_thermal_physics_2 ............. Passed 26.23 sec Start 32: test_ensemble_management_1 31/32 Test #32: test_ensemble_management_1 ......... Passed 0.17 sec Start 33: test_ensemble_management_2 32/32 Test #33: test_ensemble_management_2 ......... Passed 0.18 sec 100% tests passed, 0 tests failed out of 32 Total Test time (real) = 1418.50 sec [Pipeline] } [Pipeline] // dir Post stage [Pipeline] xunit INFO: Processing CTest-Version 3.x (default) [Pipeline] } $ docker stop --time=1 d63464297d7361a68995081ba4ebc49a5af0ec7c740aa8d3ea03308b2a5d8a93 INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/adamantine_PR-252' for the testing framework 'CTest-Version 3.x (default)'. $ docker rm -f --volumes d63464297d7361a68995081ba4ebc49a5af0ec7c740aa8d3ea03308b2a5d8a93 [Pipeline] // withDockerContainer [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } Running on fetnat06 in /var/jenkins/workspace/adamantine_PR-252 [Pipeline] { [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE using credential Jenkins ORNL Cloning the remote Git repository Cloning with configured refspecs honoured and without tags Cloning repository https://github.com/adamantine-sim/adamantine.git > git init /var/jenkins/workspace/adamantine_PR-252 # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine.git > git --version # timeout=10 > git --version # 'git version 2.17.1' using GIT_ASKPASS to set credentials > git fetch --no-tags --progress -- https://github.com/adamantine-sim/adamantine.git +refs/pull/252/head:refs/remotes/origin/PR-252 +refs/heads/master:refs/remotes/origin/master # timeout=10 Fetching without tags > git config remote.origin.url https://github.com/adamantine-sim/adamantine.git # timeout=10 > git config --add remote.origin.fetch +refs/pull/252/head:refs/remotes/origin/PR-252 # timeout=10 > git config --add remote.origin.fetch +refs/heads/master:refs/remotes/origin/master # timeout=10 > git config remote.origin.url https://github.com/adamantine-sim/adamantine.git # timeout=10 Fetching upstream changes from https://github.com/adamantine-sim/adamantine.git using GIT_ASKPASS to set credentials > git fetch --no-tags --progress -- https://github.com/adamantine-sim/adamantine.git +refs/pull/252/head:refs/remotes/origin/PR-252 +refs/heads/master:refs/remotes/origin/master # timeout=10 Merging remotes/origin/master commit 53a738c40e2bb6cfdf152bb2a09e30362e6db236 into PR head commit 5a6083bd505a0d7d922ed6b9c90c022787600928 Merge succeeded, producing 5a6083bd505a0d7d922ed6b9c90c022787600928 Checking out Revision 5a6083bd505a0d7d922ed6b9c90c022787600928 (PR-252) Commit message: "Use MPI groups to parallelize data assimilation" > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 > git remote # timeout=10 > git config --get remote.origin.url # timeout=10 using GIT_ASKPASS to set credentials > git merge 53a738c40e2bb6cfdf152bb2a09e30362e6db236 # timeout=10 > git rev-parse HEAD^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6083bd505a0d7d922ed6b9c90c022787600928 # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker pull rombur/adamantine-stack:latest latest: Pulling from rombur/adamantine-stack 301a8b74f71f: Pulling fs layer 05aa224eaff3: Pulling fs layer 916b4224fdc9: Pulling fs layer 5f045bc9a36d: Pulling fs layer 3163984ffa1b: Pulling fs layer 35bcc02992bc: Pulling fs layer 98f651096b76: Pulling fs layer 92e7e128ab27: Pulling fs layer bf4efb9535b7: Pulling fs layer 1320df5918a8: Pulling fs layer 9b8434b5f181: Pulling fs layer ef41b69ae769: Pulling fs layer 074093919319: Pulling fs layer 288b93bf46a4: Pulling fs layer 52a48ade6b25: Pulling fs layer b04549f140a6: Pulling fs layer 927c52f93525: Pulling fs layer d591fd3b9620: Pulling fs layer d0e039e9b7a5: Pulling fs layer 4c2a113f9879: Pulling fs layer bbf095d4a584: Pulling fs layer 2789501be122: Pulling fs layer a7a7e4ebd277: Pulling fs layer 95c3261c2f75: Pulling fs layer 5f045bc9a36d: Waiting 1320df5918a8: Waiting 52a48ade6b25: Waiting 4c2a113f9879: Waiting 9b8434b5f181: Waiting bbf095d4a584: Waiting 3163984ffa1b: Waiting 2789501be122: Waiting 288b93bf46a4: Waiting a7a7e4ebd277: Waiting 35bcc02992bc: Waiting 95c3261c2f75: Waiting b04549f140a6: Waiting 927c52f93525: Waiting 98f651096b76: Waiting d0e039e9b7a5: Waiting 074093919319: Waiting d591fd3b9620: Waiting bf4efb9535b7: Waiting 92e7e128ab27: Waiting 05aa224eaff3: Verifying Checksum 05aa224eaff3: Download complete 301a8b74f71f: Verifying Checksum 301a8b74f71f: Download complete 3163984ffa1b: Verifying Checksum 3163984ffa1b: Download complete 916b4224fdc9: Verifying Checksum 916b4224fdc9: Download complete 98f651096b76: Verifying Checksum 98f651096b76: Download complete bf4efb9535b7: Verifying Checksum bf4efb9535b7: Download complete 1320df5918a8: Verifying Checksum 1320df5918a8: Download complete 9b8434b5f181: Verifying Checksum 9b8434b5f181: Download complete ef41b69ae769: Verifying Checksum ef41b69ae769: Download complete 074093919319: Verifying Checksum 074093919319: Download complete 288b93bf46a4: Verifying Checksum 288b93bf46a4: Download complete 301a8b74f71f: Pull complete 05aa224eaff3: Pull complete 52a48ade6b25: Download complete b04549f140a6: Verifying Checksum b04549f140a6: Download complete 916b4224fdc9: Pull complete 5f045bc9a36d: Pull complete 3163984ffa1b: Pull complete 927c52f93525: Verifying Checksum 927c52f93525: Download complete d591fd3b9620: Verifying Checksum d591fd3b9620: Download complete d0e039e9b7a5: Verifying Checksum d0e039e9b7a5: Download complete 4c2a113f9879: Download complete bbf095d4a584: Verifying Checksum bbf095d4a584: Download complete 2789501be122: Verifying Checksum 2789501be122: Download complete a7a7e4ebd277: Verifying Checksum a7a7e4ebd277: Download complete 35bcc02992bc: Verifying Checksum 35bcc02992bc: Download complete 95c3261c2f75: Download complete 35bcc02992bc: Pull complete 98f651096b76: Pull complete 92e7e128ab27: Verifying Checksum 92e7e128ab27: Download complete 92e7e128ab27: Pull complete bf4efb9535b7: Pull complete 1320df5918a8: Pull complete 9b8434b5f181: Pull complete ef41b69ae769: Pull complete 074093919319: Pull complete 288b93bf46a4: Pull complete 52a48ade6b25: Pull complete b04549f140a6: Pull complete 927c52f93525: Pull complete d591fd3b9620: Pull complete d0e039e9b7a5: Pull complete 4c2a113f9879: Pull complete bbf095d4a584: Pull complete 2789501be122: Pull complete a7a7e4ebd277: Pull complete 95c3261c2f75: Pull complete Digest: sha256:73d1047f633d1d71caa64b01203f89188b511871872b35af176d0cc2dd4aedc3 Status: Downloaded newer image for rombur/adamantine-stack:latest docker.io/rombur/adamantine-stack:latest [Pipeline] } [Pipeline] // withEnv [Pipeline] isUnix [Pipeline] withEnv [Pipeline] { [Pipeline] sh + docker inspect -f . rombur/adamantine-stack:latest . [Pipeline] } [Pipeline] // withEnv [Pipeline] withDockerContainer fetnat06 seems to be running inside container 8a6fc7caaf5c34283e4a68b5f534b674a739b958258944386088eaa4017c8703 $ docker run -t -d -u 0:0 -w /var/jenkins/workspace/adamantine_PR-252 --volumes-from 8a6fc7caaf5c34283e4a68b5f534b674a739b958258944386088eaa4017c8703 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** rombur/adamantine-stack:latest cat $ docker top eaf1d414f56020310ffd4adedcc179055f580f9cffba36c4472a19de00b8358e -eo pid,comm [Pipeline] { [Pipeline] sh + rm -rf build + mkdir -p build [Pipeline] dir Running in /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] { [Pipeline] sh -- Using the deal.II-9.5.0-pre installation found at /opt/dealii -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_add_test.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_query_git_information.cmake -- Include macro /opt/dealii/share/deal.II/macros/macro_deal_ii_setup_target.cmake -- The CXX compiler identification is GNU 11.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /opt/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /opt/boost/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found suitable version "1.80.0", minimum required is "1.70.0") found components: chrono program_options timer unit_test_framework -- Build type: Debug -- The CUDA compiler identification is NVIDIA 11.7.99 -- Detecting CUDA compiler ABI info -- Detecting CUDA compiler ABI info - done -- Check for working CUDA compiler: /usr/local/cuda/bin/nvcc - skipped -- Detecting CUDA compile features -- Detecting CUDA compile features - done -- Configuring done -- Generating done -- Build files have been written to: /var/jenkins/workspace/adamantine_PR-252/build [Pipeline] sh + make -j8 [ 0%] Building CXX object source/CMakeFiles/Adamantine.dir/BodyForce.cc.o [ 2%] Copying amr_test.info [ 2%] Copying integration_2d.info [ 2%] Copying demo_316_short_anisotropic.info [ 3%] Copying demo_316_short.info [ 3%] Copying experimental_data_0_0.csv [ 4%] Copying demo_316_short_scan_path.txt [ 4%] Copying extruded_cube.msh [ 4%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_amr_test.info [ 4%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_anisotropic.info [ 4%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d.info [ 4%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_extruded_cube.msh [ 4%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experimental_data_0_0.csv [ 5%] Building CXX object source/CMakeFiles/Adamantine.dir/CubeHeatSource.cc.o [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short.info [ 5%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_demo_316_short_scan_path.txt [ 5%] Building CXX object source/CMakeFiles/Adamantine.dir/DataAssimilator.cc.o [ 6%] Copying integration_2d_ensemble.info [ 7%] Copying integration_2d_gold.txt [ 7%] Copying integration_3d_gold.txt [ 8%] Copying integration_3d_gold_0.txt [ 8%] Copying integration_3d_gold_1.txt [ 8%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold.txt [ 8%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_ensemble.info [ 8%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_1.txt [ 9%] Building CXX object source/CMakeFiles/Adamantine.dir/ElectronBeamHeatSource.cc.o [ 9%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_3d_gold_0.txt [ 9%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_2d_gold.txt [ 10%] Copying material_deposition_2d.txt [ 11%] Building CXX object source/CMakeFiles/Adamantine.dir/Geometry.cc.o [ 12%] Copying material_deposition_3d.txt [ 12%] Copying material_path_test_material_deposition.txt [ 12%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_2d.txt [ 12%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_deposition_3d.txt [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_material_path_test_material_deposition.txt [ 13%] Copying raytracing_experimental_data_0_0.csv [ 13%] Copying scan_path.txt [ 13%] Copying scan_path_diagonal.txt [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path.txt [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_raytracing_experimental_data_0_0.csv [ 13%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_diagonal.txt [ 13%] Building CXX object source/CMakeFiles/Adamantine.dir/GoldakHeatSource.cc.o [ 14%] Copying scan_path_event_series.inp [ 14%] Copying scan_path_test_thermal_physics.txt [ 14%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_event_series.inp [ 14%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_test_thermal_physics.txt [ 15%] Building CXX object source/CMakeFiles/Adamantine.dir/ImplicitOperator.cc.o [ 16%] Copying scan_path_L.txt [ 16%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_L.txt [ 17%] Copying scan_path_layers.txt [ 17%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_scan_path_layers.txt [ 18%] Copying bare_plate_L_ensemble.info [ 18%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_ensemble.info [ 19%] Copying bare_plate_L_da.info [ 19%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da.info [ 19%] Copying bare_plate_L_scan_path.txt [ 19%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path.txt [ 20%] Copying bare_plate_L_scan_path_fast.txt [ 20%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_scan_path_fast.txt [ 21%] Copying bare_plate_L_expt_log.txt [ 21%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_log.txt [ 21%] Building CXX object source/CMakeFiles/Adamantine.dir/MaterialProperty.cc.o [ 22%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalOperator.cc.o [ 23%] Building CXX object source/CMakeFiles/Adamantine.dir/NewtonSolver.cc.o [ 23%] Building CXX object source/CMakeFiles/Adamantine.dir/MechanicalPhysics.cc.o [ 24%] Building CXX object source/CMakeFiles/Adamantine.dir/PointCloud.cc.o [ 25%] Building CXX object source/CMakeFiles/Adamantine.dir/PostProcessor.cc.o [ 25%] Building CXX object source/CMakeFiles/Adamantine.dir/RayTracing.cc.o [ 26%] Building CXX object source/CMakeFiles/Adamantine.dir/ScanPath.cc.o [ 26%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalOperator.cc.o [ 27%] Building CXX object source/CMakeFiles/Adamantine.dir/ThermalPhysics.cc.o [ 28%] Building CXX object source/CMakeFiles/Adamantine.dir/Timer.cc.o [ 28%] Building CXX object source/CMakeFiles/Adamantine.dir/ensemble_management.cc.o [ 29%] Building CXX object source/CMakeFiles/Adamantine.dir/experimental_data_utils.cc.o [ 29%] Building CXX object source/CMakeFiles/Adamantine.dir/material_deposition.cc.o [ 30%] Building CXX object source/CMakeFiles/Adamantine.dir/validate_input_database.cc.o [ 31%] Building CUDA object source/CMakeFiles/Adamantine.dir/MaterialProperty.cu.o [ 31%] Building CUDA object source/CMakeFiles/Adamantine.dir/ThermalOperatorDevice.cu.o [ 32%] Building CUDA object source/CMakeFiles/Adamantine.dir/ThermalPhysics.cu.o [ 32%] Copying bare_plate_L_expt_data_0_0.csv [ 33%] Copying bare_plate_L_expt_data_0_1.csv [ 33%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_0.csv [ 33%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_expt_data_0_1.csv [ 33%] Copying experiment_log_test.txt [ 34%] Copying bare_plate_L_da_aug_ref_log.txt [ 34%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_experiment_log_test.txt [ 34%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_log.txt [ 34%] Copying bare_plate_L_da_aug_ref_data_0_0.csv [ 35%] Copying bare_plate_L_da_aug_ref_data_0_1.csv [ 35%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_1.csv [ 35%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_aug_ref_data_0_0.csv [ 35%] Copying bare_plate_L_da_augmented.info [ 36%] Copying thermoelastic_bare_plate.info [ 37%] Copying thermoelastic_bare_plate_scan_path.txt [ 37%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_bare_plate_L_da_augmented.info [ 38%] Copying rays_cam-0-0_test_full.csv [ 38%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_scan_path.txt [ 38%] Copying thermoelastic_bare_plate_add_material_scan_path.txt [ 38%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate.info [ 39%] Copying integration_da_add_material.info [ 39%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material.info [ 39%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_rays_cam-0-0_test_full.csv [ 40%] Copying integration_da_add_material_expt_log.txt [ 40%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_thermoelastic_bare_plate_add_material_scan_path.txt [ 40%] Copying integration_da_add_material_sp.txt [ 40%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_log.txt [ 40%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_sp.txt [ 40%] Copying integration_da_add_material_expt_pc_0_0.csv [ 40%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_pc_0_0.csv [ 41%] Copying integration_da_add_material_expt_ray_0_0.csv [ 41%] Built target _var_jenkins_workspace_adamantine_PR-252_build_bin_integration_da_add_material_expt_ray_0_0.csv [ 42%] Linking CXX static library libAdamantine.a [ 42%] Built target Adamantine [ 43%] Building CXX object tests/CMakeFiles/test_geometry.dir/test_geometry.cc.o [ 44%] Building CUDA object application/CMakeFiles/adamantine.dir/adamantine.cu.o [ 44%] Building CXX object tests/CMakeFiles/test_data_assimilator.dir/test_data_assimilator.cc.o [ 47%] Building CXX object tests/CMakeFiles/test_mechanical_operator.dir/test_mechanical_operator.cc.o [ 47%] Building CXX object tests/CMakeFiles/test_material_property.dir/test_material_property.cc.o [ 45%] Building CXX object tests/CMakeFiles/test_implicit_operator.dir/test_implicit_operator.cc.o [ 47%] Building CXX object tests/CMakeFiles/test_heat_source.dir/test_heat_source.cc.o [ 46%] Building CXX object 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tests/CMakeFiles/test_integration_3d_device.dir/test_integration_3d_device.cu.o [ 83%] Built target test_integration_da [ 84%] Building CUDA object tests/CMakeFiles/test_integration_3d_amr_device.dir/test_integration_3d_amr_device.cu.o [ 84%] Linking CUDA device code CMakeFiles/test_thermal_physics.dir/cmake_device_link.o [ 85%] Linking CUDA device code CMakeFiles/test_ensemble_management.dir/cmake_device_link.o [ 86%] Linking CXX executable ../bin/test_thermal_physics [ 87%] Linking CXX executable ../bin/test_ensemble_management [ 87%] Linking CUDA device code CMakeFiles/adamantine.dir/cmake_device_link.o [ 88%] Linking CUDA device code CMakeFiles/test_material_deposition.dir/cmake_device_link.o [ 88%] Linking CUDA device code CMakeFiles/test_integration_da_augmented.dir/cmake_device_link.o [ 89%] Linking CXX executable ../bin/adamantine [ 90%] Linking CXX executable ../bin/test_integration_da_augmented [ 91%] Linking CXX executable ../bin/test_material_deposition [ 91%] Built target test_ensemble_management [ 92%] Building CUDA object tests/CMakeFiles/test_material_property_device.dir/test_material_property_device.cu.o [ 92%] Built target test_thermal_physics [ 93%] Building CUDA object tests/CMakeFiles/test_thermal_operator_device.dir/test_thermal_operator_device.cu.o [ 93%] Built target adamantine [ 94%] Building CUDA object tests/CMakeFiles/test_thermal_physics_device.dir/test_thermal_physics_device.cu.o [ 94%] Built target test_material_deposition [ 94%] Built target test_integration_da_augmented /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1375): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1376): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1584): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1375): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1376): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1584): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1375): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1376): warning #68-D: integer conversion resulted in a change of sign /var/jenkins/workspace/adamantine_PR-252/tests/../application/adamantine.hh(1584): warning #68-D: integer conversion resulted in a change of sign [ 95%] Linking CUDA device code CMakeFiles/test_material_property_device.dir/cmake_device_link.o [ 95%] Linking CXX executable ../bin/test_material_property_device [ 95%] Linking CUDA device code CMakeFiles/test_thermal_physics_device.dir/cmake_device_link.o [ 96%] Linking CXX executable ../bin/test_thermal_physics_device [ 96%] Built target test_material_property_device [ 96%] Built target test_thermal_physics_device [ 97%] Linking CUDA device code CMakeFiles/test_thermal_operator_device.dir/cmake_device_link.o [ 98%] Linking CUDA device code CMakeFiles/test_integration_3d_device.dir/cmake_device_link.o [ 98%] Linking CXX executable ../bin/test_thermal_operator_device [ 98%] Linking CXX executable ../bin/test_integration_3d_device [ 99%] Linking CUDA device code CMakeFiles/test_integration_3d_amr_device.dir/cmake_device_link.o [ 99%] Linking CXX executable ../bin/test_integration_3d_amr_device [ 99%] Built target test_integration_3d_device [ 99%] Built target test_thermal_operator_device [ 99%] Linking CUDA device code CMakeFiles/test_integration_2d_device.dir/cmake_device_link.o [100%] Linking CXX executable ../bin/test_integration_2d_device [100%] Built target test_integration_3d_amr_device [100%] Built target test_integration_2d_device [Pipeline] sh + ctest --no-compress-output -R test_ -T Test Site: eaf1d414f560 Build name: Linux-c++ Create new tag: 20231222-1854 - Experimental Test project /var/jenkins/workspace/adamantine_PR-252/build Start 2: test_data_assimilator_1 1/38 Test #2: test_data_assimilator_1 ............ Passed 1.62 sec Start 3: test_geometry_1 2/38 Test #3: test_geometry_1 .................... Passed 1.13 sec Start 4: test_heat_source_1 3/38 Test #4: test_heat_source_1 ................. Passed 0.98 sec Start 5: test_implicit_operator_1 4/38 Test #5: test_implicit_operator_1 ........... Passed 0.43 sec Start 6: test_integration_thermoelastic_1 5/38 Test #6: test_integration_thermoelastic_1 ... Passed 402.04 sec Start 7: test_material_property_1 6/38 Test #7: test_material_property_1 ........... Passed 1.09 sec Start 8: test_mechanical_operator_1 7/38 Test #8: test_mechanical_operator_1 ......... Passed 15.76 sec Start 9: test_mechanical_physics_1 8/38 Test #9: test_mechanical_physics_1 .......... Passed 37.87 sec Start 10: test_newton_solver_1 9/38 Test #10: test_newton_solver_1 ............... Passed 0.96 sec Start 11: test_post_processor_1 10/38 Test #11: test_post_processor_1 .............. Passed 3.33 sec Start 12: test_scan_path_1 11/38 Test #12: test_scan_path_1 ................... Passed 0.96 sec Start 13: test_thermal_operator_1 12/38 Test #13: test_thermal_operator_1 ............ Passed 3.35 sec Start 14: test_timer_1 13/38 Test #14: test_timer_1 ....................... Passed 1.55 sec Start 15: test_utils_1 14/38 Test #15: test_utils_1 ....................... Passed 0.96 sec Start 16: test_integration_3d_amr_1 15/38 Test #16: test_integration_3d_amr_1 .......... Passed 14.72 sec Start 17: test_validate_input_database_1 16/38 Test #17: test_validate_input_database_1 ..... Passed 0.97 sec Start 18: test_experimental_data_1 17/38 Test #18: test_experimental_data_1 ........... Passed 8.04 sec Start 19: test_experimental_data_2 18/38 Test #19: test_experimental_data_2 ........... Passed 1.01 sec Start 20: test_integration_2d_1 19/38 Test #20: test_integration_2d_1 .............. Passed 10.57 sec Start 21: test_integration_2d_2 20/38 Test #21: test_integration_2d_2 .............. Passed 8.07 sec Start 22: test_integration_3d_1 21/38 Test #22: test_integration_3d_1 .............. Passed 140.34 sec Start 23: test_integration_3d_2 22/38 Test #23: test_integration_3d_2 .............. Passed 77.88 sec Start 24: test_integration_da_1 23/38 Test #24: test_integration_da_1 .............. Passed 230.75 sec Start 25: test_integration_da_2 24/38 Test #25: test_integration_da_2 .............. Passed 209.25 sec Start 26: test_integration_da_augmented_1 25/38 Test #26: test_integration_da_augmented_1 .... Passed 56.33 sec Start 27: test_integration_da_augmented_2 26/38 Test #27: test_integration_da_augmented_2 .... Passed 42.00 sec Start 28: test_material_deposition_1 27/38 Test #28: test_material_deposition_1 ......... Passed 15.34 sec Start 29: test_material_deposition_2 28/38 Test #29: test_material_deposition_2 ......... Passed 10.31 sec Start 30: test_thermal_physics_1 29/38 Test #30: test_thermal_physics_1 ............. Passed 47.33 sec Start 31: test_thermal_physics_2 30/38 Test #31: test_thermal_physics_2 ............. Passed 27.13 sec Start 32: test_ensemble_management_1 31/38 Test #32: test_ensemble_management_1 ......... Passed 1.22 sec Start 33: test_ensemble_management_2 32/38 Test #33: test_ensemble_management_2 ......... Passed 1.16 sec Start 34: test_integration_2d_device_1 33/38 Test #34: test_integration_2d_device_1 ....... Passed 5.37 sec Start 35: test_integration_3d_device_1 34/38 Test #35: test_integration_3d_device_1 ....... Passed 337.62 sec Start 36: test_integration_3d_amr_device_1 35/38 Test #36: test_integration_3d_amr_device_1 ... Passed 112.99 sec Start 37: test_material_property_device_1 36/38 Test #37: test_material_property_device_1 .... Passed 1.77 sec Start 38: test_thermal_operator_device_1 37/38 Test #38: test_thermal_operator_device_1 ..... Passed 3.28 sec Start 39: test_thermal_physics_device_1 38/38 Test #39: test_thermal_physics_device_1 ...... Passed 29.00 sec 100% tests passed, 0 tests failed out of 38 Total Test time (real) = 1864.57 sec [Pipeline] } [Pipeline] // dir Post stage [Pipeline] xunit INFO: Processing CTest-Version 3.x (default) INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/adamantine_PR-252' for the testing framework 'CTest-Version 3.x (default)'. [Pipeline] } $ docker stop --time=1 eaf1d414f56020310ffd4adedcc179055f580f9cffba36c4472a19de00b8358e $ docker rm -f --volumes eaf1d414f56020310ffd4adedcc179055f580f9cffba36c4472a19de00b8358e [Pipeline] // withDockerContainer [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // parallel [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // timeout [Pipeline] } [Pipeline] // withEnv [Pipeline] End of Pipeline GitHub has been notified of this commit’s build result Finished: SUCCESS