Console Output

GitHub pull request #264 of commit 0fd829a1a5cb9d50510ae1776bf539a1420b10a9, no merge conflicts.
Running as SYSTEM
Setting status of 0fd829a1a5cb9d50510ae1776bf539a1420b10a9 to PENDING with url https://cloud.cees.ornl.gov/jenkins-ci/job/Cap-experimental/110/ and message: 'Build started for merge commit.'
Using context: continuous-integration/jenkin-ci/pr
[EnvInject] - Loading node environment variables.
Building remotely on cathode (docker) in workspace /var/jenkins/workspace/Cap-experimental
No credentials specified
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ORNL-CEES/Cap # timeout=10
Fetching upstream changes from https://github.com/ORNL-CEES/Cap
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/ORNL-CEES/Cap +refs/pull/*:refs/remotes/origin/pr/* # timeout=10
 > git rev-parse 0fd829a1a5cb9d50510ae1776bf539a1420b10a9^{commit} # timeout=10
Checking out Revision 0fd829a1a5cb9d50510ae1776bf539a1420b10a9 (detached)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 0fd829a1a5cb9d50510ae1776bf539a1420b10a9 # timeout=10
Commit message: "Add Dockerfile to build mfmg and use as an alternate base image"
 > git rev-list --no-walk d9600b36bd66e9230eec1895fb929a4ca824e6cf # timeout=10
[Cap-experimental] $ /bin/sh -xe /tmp/jenkins5242967678302561121.sh
+ cd /var/jenkins/workspace/Cap-experimental/docker/jenkins
+ ./docker-run.sh
Pulling ci (dalg24/cap-stack:debug)...
debug: Pulling from dalg24/cap-stack
Digest: sha256:6338ba16d545f5974024365614396952017028274715f252242063e24fddd537
Status: Image is up to date for dalg24/cap-stack:debug
ci uses an image, skipping
Creating network "jenkinscapexperimental110_default" with the default driver
-- The CXX compiler identification is GNU 5.4.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so  
CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
  Imported targets not available for Boost version 106300
Call Stack (most recent call first):
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332 (_Boost_MISSING_DEPENDENCIES)
  cmake/SetupTPLs.cmake:22 (find_package)
  CMakeLists.txt:6 (include)


-- Boost version: 1.63.0
-- Found the following Boost libraries:
--   python
--   mpi
--   serialization
--   unit_test_framework
--   chrono
--   timer
--   system
--   filesystem
--   iostreams
--   regex
-- Found PythonInterp: /usr/local/bin/python (found version "3.5.2") 
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so (found version "3.5.2") 
MPI4PY_INCLUDE_DIR=/usr/local/lib/python3.5/dist-packages/mpi4py/include

-- Using the deal.II-8.5.1 installation found at /opt/dealii/8.5.1
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_add_test.cmake
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
-- Include macro /opt/dealii/8.5.1/share/deal.II/macros/macro_deal_ii_setup_target.cmake
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
Cap version: 0.1.0
Build type: Debug
-- Found Git: /usr/bin/git (found version "2.7.4") 
GIT_HEAD_REF=HEAD
GIT_COMMIT_HASH=0fd829a1a5cb9d50510ae1776bf539a1420b10a9
GIT_BRANCH=HEAD
GIT_REMOTE_URL=https://github.com/ORNL-CEES/Cap
-- Found clang-format: /usr/bin/clang-format-3.7
-- Found autopep8: /usr/local/bin/autopep8
-- Configuring done
-- Generating done
-- Build files have been written to: /var/jenkins/workspace/Cap-experimental/build
Scanning dependencies of target diff-clang-format_py
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_read_mesh.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_series_rc.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_parallel_rc.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_super_capacitor.info
Scanning dependencies of target version.cc
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_verification_problems.info
[  1%] Copying read_mesh.info
[  2%] Copying diff-clang-format.py
[  3%] Copying super_capacitor.info
[  4%] Query git revision
[  5%] Copying parallel_rc.info
[  6%] Copying series_rc.info
[  7%] Copying verification_problems.info
[  7%] Built target diff-clang-format_py
GIT_HEAD_REF=HEAD
GIT_COMMIT_HASH=0fd829a1a5cb9d50510ae1776bf539a1420b10a9
GIT_BRANCH=HEAD
GIT_REMOTE_URL=https://github.com/ORNL-CEES/Cap
[  7%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_super_capacitor.info
[  7%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_read_mesh.info
[  7%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_parallel_rc.info
[  7%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_series_rc.info
[  7%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_verification_problems.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_generate_mesh.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_test_mesh_2d.ucd
[  7%] Built target version.cc
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_cpp_example_super_capacitor.info
Scanning dependencies of target peak_detection.py
Scanning dependencies of target __init__.py
Scanning dependencies of target time_evolution.py
Scanning dependencies of target stage.py
[  9%] Copying mesh_2d.ucd
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[ 11%] Copying super_capacitor.info
[ 12%] Copying __init__.py
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[ 15%] Copying stage.py
[ 15%] Built target __init__.py
[ 15%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_mesh_2d.ucd
[ 15%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_test_generate_mesh.info
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[ 15%] Built target _var_jenkins_workspace_Cap-experimental_build_cpp_example_super_capacitor.info
Scanning dependencies of target data_helpers.py
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[ 15%] Built target stage.py
Scanning dependencies of target end_criterion.py
Scanning dependencies of target observer_pattern.py
Scanning dependencies of target ragone_plot.py
Scanning dependencies of target voltammetry.py
[ 17%] Copying data_helpers.py
Scanning dependencies of target impedance_spectroscopy.py
[ 18%] Copying charge_discharge.py
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[ 20%] Copying end_criterion.py
[ 21%] Copying ragone_plot.py
[ 22%] Copying voltammetry.py
[ 23%] Copying impedance_spectroscopy.py
[ 23%] Built target data_helpers.py
[ 23%] Built target observer_pattern.py
[ 23%] Built target charge_discharge.py
[ 23%] Built target end_criterion.py
[ 23%] Built target ragone_plot.py
[ 23%] Built target voltammetry.py
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_python_test_mesh_2d.ucd
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_python_test_super_capacitor.info
Scanning dependencies of target test_time_evolution.py
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_python_test_parallel_rc.info
Scanning dependencies of target _var_jenkins_workspace_Cap-experimental_build_python_test_series_rc.info
[ 23%] Built target impedance_spectroscopy.py
Scanning dependencies of target test_stage.py
[ 25%] Copying mesh_2d.ucd
[ 26%] Copying super_capacitor.info
[ 27%] Copying test_time_evolution.py
[ 28%] Copying parallel_rc.info
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Scanning dependencies of target test_energy_storage_device_wrappers.py
[ 30%] Copying test_stage.py
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[ 31%] Built target _var_jenkins_workspace_Cap-experimental_build_python_test_mesh_2d.ucd
[ 31%] Built target _var_jenkins_workspace_Cap-experimental_build_python_test_series_rc.info
[ 31%] Built target _var_jenkins_workspace_Cap-experimental_build_python_test_super_capacitor.info
[ 31%] Built target test_time_evolution.py
[ 31%] Built target _var_jenkins_workspace_Cap-experimental_build_python_test_parallel_rc.info
[ 31%] Built target test_stage.py
Scanning dependencies of target test_impedance_spectroscopy.py
Scanning dependencies of target test_ragone_plot.py
Scanning dependencies of target test_charge_discharge.py
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Scanning dependencies of target test_end_criterion.py
[ 32%] Copying test_impedance_spectroscopy.py
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Scanning dependencies of target test_voltammetry.py
[ 38%] Copying test_end_criterion.py
[ 39%] Copying test_voltammetry.py
[ 39%] Built target test_impedance_spectroscopy.py
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Scanning dependencies of target test_observer_pattern.py
[ 39%] Built target test_voltammetry.py
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[ 40%] Built target test_observer_pattern.py
Scanning dependencies of target Cap
[ 42%] Building CXX object cpp/CMakeFiles/Cap.dir/source/version.cc.o
[ 43%] Building CXX object cpp/CMakeFiles/Cap.dir/source/utils.cc.o
[ 44%] Building CXX object cpp/CMakeFiles/Cap.dir/source/energy_storage_device.cc.o
[ 45%] Building CXX object cpp/CMakeFiles/Cap.dir/source/resistor_capacitor.cc.o
[ 46%] Building CXX object cpp/CMakeFiles/Cap.dir/source/default_inspector.cc.o
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[ 48%] Building CXX object cpp/CMakeFiles/Cap.dir/source/deal.II/supercapacitor.cc.o
[ 50%] Building CXX object cpp/CMakeFiles/Cap.dir/source/deal.II/physics.cc.o
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[ 52%] Building CXX object cpp/CMakeFiles/Cap.dir/source/deal.II/geometry.cc.o
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[ 55%] Building CXX object cpp/CMakeFiles/Cap.dir/source/deal.II/equivalent_circuit.cc.o
[ 56%] Linking CXX shared library libCap.so
[ 56%] Built target Cap
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[ 57%] Building CXX object cpp/test/CMakeFiles/test_parse_params.exe.dir/test_parse_params.cc.o
[ 59%] Building CXX object cpp/test/CMakeFiles/test_checkpoint_restart.exe.dir/test_checkpoint_restart.cc.o
[ 60%] Building CXX object cpp/test/CMakeFiles/test_supercapacitor.exe.dir/test_supercapacitor.cc.o
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[ 61%] Building CXX object cpp/test/CMakeFiles/test_timer.exe.dir/test_timer.cc.o
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[ 62%] Building CXX object cpp/test/CMakeFiles/test_equivalent_circuit.exe.dir/test_equivalent_circuit.cc.o
[ 63%] Building CXX object cpp/test/CMakeFiles/test_mp_values.exe.dir/test_mp_values.cc.o
[ 64%] Building CXX object cpp/test/CMakeFiles/test_exact_transient_solution.exe.dir/test_exact_transient_solution.cc.o
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[ 70%] Linking CXX executable test_parse_params.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
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[ 71%] Building CXX object cpp/test/CMakeFiles/test_supercapacitor_inspector.exe.dir/test_supercapacitor_inspector.cc.o
[ 72%] Linking CXX executable test_equivalent_circuit.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 72%] Built target test_supercapacitor.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
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[ 73%] Building CXX object cpp/test/CMakeFiles/test_resistor_capacitor_circuit.exe.dir/test_resistor_capacitor_circuit.cc.o
Scanning dependencies of target test_energy_storage_device.exe
[ 75%] Building CXX object cpp/test/CMakeFiles/test_energy_storage_device.exe.dir/test_energy_storage_device.cc.o
CMakeFiles/test_parse_params.exe.dir/test_parse_params.cc.o: In function `test_parse_params::test_method()':
/var/jenkins/workspace/Cap-experimental/cpp/test/test_parse_params.cc:38: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 75%] Built target test_parse_params.exe
Scanning dependencies of target test_distributed_energy_storage.exe
[ 76%] Building CXX object cpp/test/CMakeFiles/test_distributed_energy_storage.exe.dir/test_distributed_energy_storage.cc.o
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 76%] Built target test_equivalent_circuit.exe
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Scanning dependencies of target test_supercapacitor_2d_vs_3d.exe
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[ 79%] Linking CXX executable test_geometry.exe
[ 80%] Linking CXX executable test_resistor_capacitor_circuit.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 80%] Built target test_exact_transient_solution.exe
Scanning dependencies of target test_resistor_capacitor_circuit-2.exe
[ 81%] Building CXX object cpp/test/CMakeFiles/test_resistor_capacitor_circuit-2.exe.dir/test_resistor_capacitor_circuit-2.cc.o
[ 82%] Linking CXX executable test_mp_values.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 82%] Built target test_resistor_capacitor_circuit.exe
Scanning dependencies of target test_postprocessor.exe
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[ 85%] Linking CXX executable test_supercapacitor_inspector.exe
[ 86%] Linking CXX executable test_distributed_energy_storage.exe
[ 87%] Linking CXX executable test_resistor_capacitor_circuit-2.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 87%] Built target test_supercapacitor_inspector.exe
Scanning dependencies of target scaling.exe
[ 88%] Building CXX object cpp/example/CMakeFiles/scaling.exe.dir/scaling.cc.o
[ 89%] Linking CXX executable test_energy_storage_device.exe
[ 90%] Linking CXX executable test_supercapacitor_2d_vs_3d.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 90%] Built target test_geometry.exe
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 90%] Built target test_distributed_energy_storage.exe
Scanning dependencies of target PyCap
[ 92%] Building CXX object python/source/CMakeFiles/PyCap.dir/wrappers/property_tree_wrappers.cc.o
[ 93%] Building CXX object python/source/CMakeFiles/PyCap.dir/wrappers/energy_storage_device_wrappers.cc.o
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 93%] Built target test_resistor_capacitor_circuit-2.exe
[ 94%] Building CXX object python/source/CMakeFiles/PyCap.dir/wrappers/export_property_tree.cc.o
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 94%] Built target test_mp_values.exe
[ 95%] Building CXX object python/source/CMakeFiles/PyCap.dir/wrappers/export_energy_storage_device.cc.o
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 95%] Built target test_energy_storage_device.exe
[ 96%] Building CXX object python/source/CMakeFiles/PyCap.dir/wrappers/python_wrappers.cc.o
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[ 96%] Built target test_supercapacitor_2d_vs_3d.exe
[ 97%] Linking CXX executable test_postprocessor.exe
[ 98%] Linking CXX executable scaling.exe
[100%] Linking CXX shared module ../pycap/PyCap.so
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[100%] Built target scaling.exe
[100%] Built target PyCap
../libCap.so.0.1.0: undefined reference to `std::vector<unsigned char, std::allocator<unsigned char> > cap::to_vector<unsigned char>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
[100%] Built target test_postprocessor.exe
   Site: 888f102871c8
   Build name: Linux-c++
Create new tag: 20190724-2139 - Experimental
Test project /var/jenkins/workspace/Cap-experimental/build
      Start  1: check_format_cpp
      Start  2: check_format_py
      Start  3: test_parse_params_cpp_1
      Start  4: test_energy_storage_device_cpp_1
      Start  5: test_resistor_capacitor_circuit_cpp_1
      Start  6: test_resistor_capacitor_circuit-2_cpp_1
      Start  7: test_timer_cpp_1
      Start  8: test_geometry_cpp_1
 1/31 Test  #8: test_geometry_cpp_1 ........................***Failed    0.80 sec
      Start  9: test_postprocessor_cpp_1
 2/31 Test  #5: test_resistor_capacitor_circuit_cpp_1 ......***Failed    0.81 sec
 3/31 Test  #4: test_energy_storage_device_cpp_1 ...........***Failed    0.81 sec
 4/31 Test  #6: test_resistor_capacitor_circuit-2_cpp_1 ....***Failed    0.80 sec
 5/31 Test  #7: test_timer_cpp_1 ...........................***Failed    0.80 sec
 6/31 Test  #3: test_parse_params_cpp_1 ....................***Failed    0.91 sec
 7/31 Test  #9: test_postprocessor_cpp_1 ...................***Failed    0.20 sec
      Start 10: test_mp_values_cpp_1
      Start 11: test_equivalent_circuit_cpp_1
      Start 12: test_exact_transient_solution_cpp_1
      Start 13: test_supercapacitor_cpp_1
      Start 14: test_checkpoint_restart_cpp_2
 8/31 Test #11: test_equivalent_circuit_cpp_1 ..............***Failed    0.36 sec
 9/31 Test #14: test_checkpoint_restart_cpp_2 ..............***Failed    0.35 sec
      Start 15: test_distributed_energy_storage_cpp_1
      Start 16: test_distributed_energy_storage_cpp_2
10/31 Test #10: test_mp_values_cpp_1 .......................***Failed    0.57 sec
11/31 Test #12: test_exact_transient_solution_cpp_1 ........***Failed    0.57 sec
12/31 Test #13: test_supercapacitor_cpp_1 ..................***Failed    0.56 sec
13/31 Test #15: test_distributed_energy_storage_cpp_1 ......***Failed    0.15 sec
14/31 Test  #2: check_format_py ............................   Passed    1.89 sec
      Start 17: test_distributed_energy_storage_cpp_4
      Start 19: test_supercapacitor_2d_vs_3d_cpp_1
15/31 Test #16: test_distributed_energy_storage_cpp_2 ......***Failed    0.32 sec
16/31 Test #17: test_distributed_energy_storage_cpp_4 ......***Failed    0.21 sec
      Start 18: test_supercapacitor_inspector_cpp_2
      Start 20: test_supercapacitor_2d_vs_3d_cpp_2
      Start 22: test_property_tree_wrappers_py_1
      Start 23: test_energy_storage_device_wrappers_py_1
17/31 Test #20: test_supercapacitor_2d_vs_3d_cpp_2 .........***Failed    0.28 sec
18/31 Test #19: test_supercapacitor_2d_vs_3d_cpp_1 .........***Failed    0.59 sec
19/31 Test  #1: check_format_cpp ...........................   Passed    2.49 sec
      Start 21: test_supercapacitor_2d_vs_3d_cpp_4
20/31 Test #18: test_supercapacitor_inspector_cpp_2 ........***Failed    0.39 sec
21/31 Test #21: test_supercapacitor_2d_vs_3d_cpp_4 .........***Failed    0.20 sec
      Start 24: test_end_criterion_py_1
      Start 25: test_time_evolution_py_1
      Start 26: test_stage_py_1
      Start 27: test_charge_discharge_py_1
      Start 28: test_voltammetry_py_1
      Start 29: test_ragone_plot_py_1
22/31 Test #23: test_energy_storage_device_wrappers_py_1 ...***Failed    1.40 sec
23/31 Test #22: test_property_tree_wrappers_py_1 ...........***Failed    1.40 sec
      Start 30: test_impedance_spectroscopy_py_1
      Start 31: test_observer_pattern_py_1
24/31 Test #28: test_voltammetry_py_1 ......................***Failed    2.82 sec
25/31 Test #25: test_time_evolution_py_1 ...................***Failed    3.13 sec
26/31 Test #26: test_stage_py_1 ............................***Failed    3.13 sec
27/31 Test #24: test_end_criterion_py_1 ....................***Failed    3.14 sec
28/31 Test #27: test_charge_discharge_py_1 .................***Failed    3.13 sec
29/31 Test #31: test_observer_pattern_py_1 .................***Failed    2.11 sec
30/31 Test #29: test_ragone_plot_py_1 ......................***Failed    3.83 sec
31/31 Test #30: test_impedance_spectroscopy_py_1 ...........***Failed    2.48 sec

6% tests passed, 29 tests failed out of 31

Total Test time (real) =   6.61 sec

The following tests FAILED:
	  3 - test_parse_params_cpp_1 (Failed)
	  4 - test_energy_storage_device_cpp_1 (Failed)
	  5 - test_resistor_capacitor_circuit_cpp_1 (Failed)
	  6 - test_resistor_capacitor_circuit-2_cpp_1 (Failed)
	  7 - test_timer_cpp_1 (Failed)
	  8 - test_geometry_cpp_1 (Failed)
	  9 - test_postprocessor_cpp_1 (Failed)
	 10 - test_mp_values_cpp_1 (Failed)
	 11 - test_equivalent_circuit_cpp_1 (Failed)
	 12 - test_exact_transient_solution_cpp_1 (Failed)
	 13 - test_supercapacitor_cpp_1 (Failed)
	 14 - test_checkpoint_restart_cpp_2 (Failed)
	 15 - test_distributed_energy_storage_cpp_1 (Failed)
	 16 - test_distributed_energy_storage_cpp_2 (Failed)
	 17 - test_distributed_energy_storage_cpp_4 (Failed)
	 18 - test_supercapacitor_inspector_cpp_2 (Failed)
	 19 - test_supercapacitor_2d_vs_3d_cpp_1 (Failed)
	 20 - test_supercapacitor_2d_vs_3d_cpp_2 (Failed)
	 21 - test_supercapacitor_2d_vs_3d_cpp_4 (Failed)
	 22 - test_property_tree_wrappers_py_1 (Failed)
	 23 - test_energy_storage_device_wrappers_py_1 (Failed)
	 24 - test_end_criterion_py_1 (Failed)
	 25 - test_time_evolution_py_1 (Failed)
	 26 - test_stage_py_1 (Failed)
	 27 - test_charge_discharge_py_1 (Failed)
	 28 - test_voltammetry_py_1 (Failed)
	 29 - test_ragone_plot_py_1 (Failed)
	 30 - test_impedance_spectroscopy_py_1 (Failed)
	 31 - test_observer_pattern_py_1 (Failed)
Errors while running CTest
Build step 'Execute shell' marked build as failure
INFO: Starting to record.
INFO: Processing CTest-Version 3.x (default)
INFO: [CTest-Version 3.x (default)] - 1 test report file(s) were found with the pattern 'build/Testing/**/Test.xml' relative to '/var/jenkins/workspace/Cap-experimental' for the testing framework 'CTest-Version 3.x (default)'.
INFO: Check 'Failed Tests' threshold.
INFO: Check 'Skipped Tests' threshold.
INFO: Setting the build status to FAILURE
INFO: Stopping recording.
[WARNINGS] Skipping publisher since build result is FAILURE
Setting status of 0fd829a1a5cb9d50510ae1776bf539a1420b10a9 to FAILURE with url https://cloud.cees.ornl.gov/jenkins-ci/job/Cap-experimental/110/ and message: 'Build finished. '
Using context: continuous-integration/jenkin-ci/pr
Finished: FAILURE